Chocolate Almond Flour Cupcakes – Detoxinista

Almond Flour Cupcakes have a rich, chocolate flavor and are surprisingly fluffy. They are naturally sweetened and gluten-free, but you’d never know just by tasting them! 

Chocolate almond flour cupcake topped with frosting and heart sprinkles.

If you’re hoping to serve delicious gluten-free chocolate cupcakes for a birthday party or special event, this is the cupcake recipe for you. They have a tender crumb and will rival your favorite cupcake recipe!

These Paleo chocolate cupcakes don’t bake up quite as tall as a bakery cupcake would, but they have an amazing taste and texture, without using any white flour or sugar. 

Top them with your favorite chocolate frosting, and you’ll have an impressive homemade dessert!

Ingredients You’ll Need

ingredients for chocolate almond flour cupcakes labeled on a white surface.

This cupcake recipe is made with blanched almond flour, which provides a fluffier texture when compared to using almond meal. (Almond meal is made with whole ground almonds, so there are brown flecks in the flour from the skins.)

Using maple syrup as the sweetener keeps the cupcakes moist and fluffy. When I originally tried making this recipe with coconut sugar, I got a more brownie-like texture. (That’s how my Almond Flour Brownies were born!) 

Coconut oil keeps this recipe dairy-free, but you can use melted butter if you prefer.

chocolate almond flour cupcake cut in half on a wrapper.

How to Make Chocolate Almond Flour Cupcakes

Preheat the oven to 350ºF and line a standard muffin tin with 12 paper cupcake liners.

In a large mixing bowl, combine the almond flour, cocoa powder, baking powder, and salt. You can whisk these dry ingredients together first, if you’d like to break up any clumps in the flour, but it’s not necessary since there’s no risk of over-mixing gluten-free cupcake batter. 

Next, add in the maple syrup, eggs, and vanilla extract. It’s best if you can let the eggs and maple syrup come to room temperature before mixing the batter, but this will still work even if they are cold from the fridge. If you’re using cold ingredients, stir in the coconut oil last, so the eggs and maple syrup can lose some of their chill as you stir.

almond flour cupcake batter mixed in a glass bowl with whisk.

Stir the wet ingredients into the batter until it looks smooth, then add the coconut oil and mix again. Use a 1/4 cup to scoop the batter and pour it into the prepared muffin pan. 

Once the batter has been divided evenly among the muffin cups, bake the cupcakes at 350ºF for 25 minutes. You’ll know the cupcakes are done when the centers feel firm to a light touch, or when a toothpick inserted into the center comes out clean with minimal crumbs. 

cupcakes before and after baking in a pan.

Let the cupcakes cool completely in the pan. Once they are cool, you can top them with your favorite frosting and sprinkles. (Buttercream frosting will melt if you add it to cupcakes that are still warm, so be patient!)

Storage Tips: Leftover gluten-free cupcakes can be stored in an airtight container in the fridge for up to 5 days. If you want to make these ahead of time, you can store these in the fridge before frosting them, too! This chocolate cupcake recipe can also be frozen, if you store it in a tightly sealed container, for up to 3 months. 

If you store these cupcakes at room temperature without covering them, they may dry out overnight. When stored in an airtight container at room temperature (or tightly covered in plastic wrap if you leave them in the pan) these cupcakes can develop a sticky texture on the top. They still taste good, but it’s something to keep in mind when storing. The fridge is best!

almond flour cupcake with wrapper peeled off and topped with frosting.

Frequently Asked Questions

Is there a trick to baking with almond flour?

The key to using almond flour is to start with a recipe that already calls for almond flour. You can’t swap almond flour for all-purpose flour or coconut flour without making major adjustments, so look for a recipe that already uses the flour you plan on using. 

Are these cupcakes low carb?

No, my goal in sharing this recipe is to provide a delicious alternative for those who can’t have regular chocolate cupcakes. If you are hoping to make keto chocolate cupcakes, you’d need to replace the maple syrup with a sugar-free alternative that has a similar consistency. (For example, a maple syrup substitute made with erythritol or other zero calorie sweetener.) I’d love to hear if you have any success making modifications for keto cupcakes!

Can I use honey as the sweetener?

Honey has a stronger flavor than maple syrup, so you might want to use a little less than this recipe calls for. I’m not sure how that will affect the overall texture, so it will be an experiment if you decide to give this a try. I think the maple syrup flavor pairs better with chocolate, if you’re trying to please a crowd.

Looking for more almond flour recipes? Try Almond Flour Chocolate Chip Cookies, Almond Flour Cake, or Almond Flour Pancakes for more ideas.

Chocolate almond flour cupcake topped with frosting and heart sprinkles.

Chocolate Almond Flour Cupcakes

Chocolate Almond Flour Cupcakes are amazingly fluffy and gluten-free. You’d never know they are naturally sweetened just by tasting them!

Prep Time: 10 minutes

Cook Time: 25 minutes

Total Time: 35 minutes

Servings: 12


  • Preheat the oven to 350ºF and line a muffin tin with 12 cupcake liners.

  • In a large bowl, combine the almond flour, cacao powder, baking powder, salt, maple syrup, eggs, and vanilla. Stir well, and be sure to break up any clumps that form until the batter is smooth. Stir in the coconut oil last, so that it will be less likely to clump from touching any cold ingredients.

  • Once the batter is smooth, use a ¼ cup measure to pour the batter into the prepared cupcake liners. They should all be relatively full from this amount of batter. Bake at 350ºF until the center of the cupcakes feel firm to a light touch, about 25 minutes.

  • Let the cupcakes cool completely in the pan; it’s okay if they have a slight dip in the center. When they are cool, you can frost them or decorate as you like.

  • These cupcakes should last for up to 5 days when stored in an airtight container in the fridge, or you can freeze them for up to 3 months.


Nutrition information is for 1 of 12 cupcakes. This information is automatically calculated using generic ingredients and is just an estimate, not a guarantee.
Note: If your eggs and maple syrup are cold from the fridge, they could cause the coconut oil to harden and form clumps in the batter. It’s best if you can bring them to room temperature first, but if you’re in a hurry, this batter will still work as long as you stir in the coconut oil last. (That way it the other ingredients can lose their chill a bit.)


Calories: 151kcal, Carbohydrates: 18g, Protein: 4g, Fat: 8g, Saturated Fat: 3g, Cholesterol: 62mg, Sodium: 121mg, Potassium: 188mg, Fiber: 2g, Sugar: 13g, Vitamin A: 87IU, Calcium: 78mg, Iron: 1mg

If you try these Chocolate Almond Flour Cupcakes, please leave a comment and star rating below letting me know how you like them.

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